Publications

Hu, Kaining , Yang, Runwei , Qiu, Jiaming , Feng, Xinran , LaPre, Kayleigh J. , Tanouye, Jessica , Yang, Yalan , Zhang, Xiaochang (2026). Alternative splicing-triggered mRNA decay informs splice-switching targets for neurodevelopmental disorders. The Journal of Clinical Investigation.

Ruan, Xiangbin , Hu, Kaining , Yang, Yalan , Yang, Runwei , Tseng, Elizabeth , Kang, Bowei , Kauffman, Aileen , Zhong, Rong , Zhang, Xiaochang (2025). Cell-Type–Specific Splicing of Transcription Regulators and Ptbp1 by Rbfox1/2/3 in the Developing Neocortex. Journal of Neuroscience.

Kang, Bowei , Yang, Yalan , Hu, Kaining , Ruan, Xiangbin , Liu, Yi-Lin , Lee, Pinky , Lee, Jasper , Wang, Jingshu , Zhang, Xiaochang (2023). Infernape uncovers cell type–specific and spatially resolved alternative polyadenylation in the brain. Genome Research.

Ruan, Xiangbin , Hu, Kaining , Zhang, Xiaochang (2023). PIE-seq: identifying RNA-binding protein targets by dual RNA-deaminase editing and sequencing. Nature Communications.

Chen, Jiao , Zhang, Sihao , Li, Bao , Zhuo, Chenjian , Hu, Kaining , Wen, Jing , Yi, Bin , Ma, Chaozhi , Shen, Jinxiong , Fu, Tingdong , Tu, Jinxing (2023). Fine mapping of BnDM1—the gene regulating indeterminate inflorescence in Brassica napus. Theoretical and Applied Genetics.

Yang, Runwei , Feng, Xinran , Arias-Cavieres, Alejandra , Mitchell, Robin M. , Polo, Ashleigh , Hu, Kaining , Zhong, Rong , Qi, Cai , Zhang, Rachel S. , Westneat, Nathaniel , Portillo, Cristabel A. , Nobrega, Marcelo A. , Hansel, Christian , Garcia III, Alfredo J. , Zhang, Xiaochang (2023). Upregulation of SYNGAP1 expression in mice and human neurons by redirecting alternative splicing. Neuron.

Ge, Xuejun , Xue, Gang , Ding, Yan , Li, Ran , Hu, Kaining , Xu, Tengjiao , Sun, Ming , Liao, Wang , Zhao, Bin , Wen, Chuangyu , Du, Jie (2023). The Loss of YTHDC1 in Gut Macrophages Exacerbates Inflammatory Bowel Disease. Advanced Science.

Zhang, Ka , Liu, Fei , Wang, Zhixin , Zhuo, Chenjian , Hu, Kaining , Li, Xiaoxia , Wen, Jing , Yi, Bin , Shen, Jinxiong , Ma, Chaozhi , Fu, Tingdong , Tu, Jinxing (2022). Transcription factor WRKY28 curbs WRKY33-mediated resistance to Sclerotinia sclerotiorum in Brassica napus. Plant Physiology.

Xiong, Jie , Hu, Kaining , Shalby, Nesma , Zhuo, Chenjian , Wen, Jing , Yi, Bin , Shen, Jinxiong , Ma, Chaozhi , Fu, Tingdong , Tu, Jinxing (2022). Comparative transcriptomic analysis reveals the molecular mechanism underlying seedling biomass heterosis in Brassica napus. BMC Plant Biology.

Zhang, Haiyan , Li, Xiaoting , Yang, Yebitao , Hu, Kaining , Zhou, Xianming , Wen, Jing , Yi, Bin , Shen, Jinxiong , Ma, Chaozhi , Fu, Tingdong , Tu, Jinxing (2022). *BnaA02.YTG1*, encoding a tetratricopeptide repeat protein, is required for early chloroplast biogenesis in *Brassica napus*. The Crop Journal.

Qi, Cai , Feng, Irena , Costa, Ana Rita , Pinto-Costa, Rita , Neil, Jennifer E. , Caluseriu, Oana , Li, Dong , Ganetzky, Rebecca D. , Brasch-Andersen, Charlotte , Fagerberg, Christina , Hansen, Lars Kjærsgaard , Bupp, Caleb , Muraresku, Colleen Clarke , Ruan, Xiangbin , Kang, Bowei , Hu, Kaining , Zhong, Rong , Brites, Pedro , Bhoj, Elizabeth J. , Hill, Robert Sean , Falk, Marni J. , Hakonarson, Hakon , Kahle, Kristopher T. , Sousa, Monica M. , Walsh, Christopher A. , Zhang, Xiaochang (2022). Variants in *ADD1* cause intellectual disability, corpus callosum dysgenesis, and ventriculomegaly in humans. Genetics in Medicine.

Song, Jurong , Li, Bao , Cui, Yanke , Zhuo, Chenjian , Gu, Yuanguo , Hu, Kaining , Wen, Jing , Yi, Bin , Shen, Jinxiong , Ma, Chaozhi (2021). QTL mapping and diurnal transcriptome analysis identify candidate genes regulating Brassica napus flowering time. International journal of molecular sciences.

Shalby, Nesma , Mohamed, Ibrahim A. A. , Xiong, Jie , Hu, Kaining , Yang, Yebitao , Nishawy, Elsayed , Yi, Bin , Wen, Jing , Ma, Chaozhi , Shen, Jinxiong , Fu, Tingdong , Tu, Jinxing (2021). Overdominance at the Gene Expression Level Plays a Critical Role in the Hybrid Root Growth of Brassica napus. International Journal of Molecular Sciences.

Xu, Kai , Wu, Yujin , Song, Jurong , Hu, Kaining , Wu, Zengxiang , Wen, Jing , Yi, Bin , Ma, Chaozhi , Shen, Jinxiong , Fu, Tingdong (2021). Fine mapping and identification of bnac06. Ftsh1, a lethal gene that regulates the psii repair cycle in brassica napus. International journal of molecular sciences.

Zhang, Haiyan , Li, Xiaoting , Yang, Yebitao , Hu, Kaining , Zhou, Xianming , Wen, Jing , Yi, Bin , Shen, Jinxiong , Ma, Chaozhi , Fu, Tingdong (2021). BnaA02. YTG1, encoding a tetratricopeptide repeat protein, is required for early chloroplast biogenesis in Brassica napus. The Crop Journal.

Zhang, Zhiqiang , Fan, Yu , Xiong, Jie , Guo, Xiang , Hu, Kaining , Wang, Zhixin , Gao, Jie , Wen, Jing , Yi, Bin , Shen, Jinxiong (2020). Two young genes reshape a novel interaction network in Brassica napus. New Phytologist.

Lu, Hongchen , Xu, Ping , Hu, Kaining , Xiao, Qing , Wen, Jing , Yi, Bin , Ma, Chaozhi , Tu, Jinxing , Fu, Tingdong , Shen, Jinxiong (2020). Transcriptome profiling reveals cytokinin promoted callus regeneration in Brassica juncea. Plant Cell, Tissue and Organ Culture (PCTOC).

Zhao, Xiaobin , Hu, Kaining , Yan, Mengjiao , Yi, Bin , Wen, Jing , Ma, Chaozhi , Shen, Jinxiong , Fu, Tingdong , Tu, Jinxing (2020). Disruption of carotene biosynthesis leads to abnormal plastids and variegated leaves in Brassica napus. Molecular Genetics and Genomics.

Hu, Kaining , Xu, Kai , Wen, Jing , Yi, Bin , Shen, Jinxiong , Ma, Chaozhi , Fu, Tingdong , Ouyang, Yidan , Tu, Jinxing (2019). Helitron distribution in Brassicaceae and whole Genome Helitron density as a character for distinguishing plant species. BMC Bioinformatics.

Wu, Zengxiang , Hu, Kaining , Yan, Mengjiao , Song, Liping , Wen, Jing , Ma, Chaozhi , Shen, Jinxiong , Fu, Tingdong , Yi, Bin , Tu, Jinxing (2019). Mitochondrial genome and transcriptome analysis of five alloplasmic male-sterile lines in Brassica juncea. BMC Genomics.

Hong, Meiyan , Hu, Kaining , Tian, Tiantian , Li, Xia , Chen, Li , Zhang, Yan , Yi, Bin , Wen, Jing , Ma, Chaozhi , Shen, Jinxiong , Fu, Tingdong , Tu, Jinxing (2017). Transcriptomic Analysis of Seed Coats in Yellow-Seeded Brassica napus Reveals Novel Genes That Influence Proanthocyanidin Biosynthesis. Frontiers in Plant Science.

Xu, Ping , Cao, Shiqin , Hu, Kaining , Wang, Xiaohua , Huang, Wei , Wang, Gang , Lv, Zewen , Liu, Zhongsong , Wen, Jing , Yi, Bin , Ma, Chaozhi , Tu, Jinxing , Fu, Tingdong , Shen, Jinxiong (2017). Trilocular phenotype in Brassica juncea L. resulted from interruption of CLAVATA1 gene homologue (BjMc1) transcription. Scientific Reports.

Heng, Shuangping , Chen, Fengyi , Wei, Chao , Hu, Kaining , Yang, Zonghui , Wen, Jing , Yi, Bin , Ma, Chaozhi , Tu, Jinxing , Si, Ping , Fu, Tingdong , Shen, Jinxiong (2017). Identification of different cytoplasms based on newly developed mitotype-specific markers for marker-assisted selection breeding in Brassica napus L.. Plant Cell Reports.

Xu, Liping , Zeisler, Viktoria , Schreiber, Lukas , Gao, Jie , Hu, Kaining , Wen, Jing , Yi, Bin , Shen, Jinxiong , Ma, Chaozhi , Tu, Jinxing , Fu, Tingdong (2017). Overexpression of the Novel Arabidopsis Gene At5g02890 Alters Inflorescence Stem Wax Composition and Affects Phytohormone Homeostasis. Frontiers in Plant Science.

Luo, Xiang , Xue, Zhifei , Ma, Chaozhi , Hu, Kaining , Zeng, Ziru , Dou, Shengwei , Tu, Jinxing , Shen, Jinxiong , Yi, Bin , Fu, Tingdong (2017). Joint genome-wide association and transcriptome sequencing reveals a complex polygenic network underlying hypocotyl elongation in rapeseed (Brassica napus L.). Scientific Reports.

Sun, Chengming , Wang, Benqi , Wang, Xiaohua , Hu, Kaining , Li, Kaidi , Li, Zhanyu , Li, San , Yan, Lei , Guan, Chunyun , Zhang, Jiefu , Zhang, Zhenqian , Chen, Song , Wen, Jing , Tu, Jinxing , Shen, Jinxiong , Fu, Tingdong , Yi, Bin (2016). Genome-Wide Association Study Dissecting the Genetic Architecture Underlying the Branch Angle Trait in Rapeseed (Brassica napus L.). Scientific Reports.

Xia, Shengqian , Wang, Zhixin , Zhang, Haiyan , Hu, Kaining , Zhang, Zhiqiang , Qin, Maomao , Dun, Xiaoling , Yi, Bin , Wen, Jing , Ma, Chaozhi , Shen, Jinxiong , Fu, Tingdong , Tu, Jinxing (2016). Altered Transcription and Neofunctionalization of Duplicated Genes Rescue the Harmful Effects of a Chimeric Gene in Brassica napus. The Plant Cell.

Sun, Chengming , Wang, Benqi , Yan, Lei , Hu, Kaining , Liu, Sheng , Zhou, Yongming , Guan, Chunyun , Zhang, Zhenqian , Li, Jiana , Zhang, Jiefu , Chen, Song , Wen, Jing , Ma, Chaozhi , Tu, Jinxing , Shen, Jinxiong , Fu, Tingdong , Yi, Bin (2016). Genome-Wide Association Study Provides Insight into the Genetic Control of Plant Height in Rapeseed (Brassica napus L.). Frontiers in Plant Science.

Zhao, Xinwang , Li, Bao , Zhang, Ka , Hu, Kaining , Yi, Bin , Wen, Jing , Ma, Chaozhi , Shen, Jinxiong , Fu, Tingdong , Tu, Jinxing (2016). Breeding signature of combining ability improvement revealed by a genomic variation map from recurrent selection population in Brassica napus. Scientific Reports.

Du, Chunfang , Hu, Kaining , Xian, Shuanshi , Liu, Chunqing , Fan, Jianchun , Tu, Jinxing , Fu, Tingdong (2016). Dynamic transcriptome analysis reveals AP2/ERF transcription factors responsible for cold stress in rapeseed (Brassica napus L.). Molecular Genetics and Genomics.

Xu, Liping , Hu, Kaining , Zhang, Zhenqian , Guan, Chunyun , Chen, Song , Hua, Wei , Li, Jiana , Wen, Jing , Yi, Bin , Shen, Jinxiong , Ma, Chaozhi , Tu, Jinxing , Fu, Tingdong (2016). Genome-wide association study reveals the genetic architecture of flowering time in rapeseed (Brassica napus L.). DNA Research.

Liu, Chunqing , Zhang, Xuekun , Zhang, Ka , An, Hong , Hu, Kaining , Wen, Jing , Shen, Jinxiong , Ma, Chaozhi , Yi, Bin , Tu, Jinxing , Fu, Tingdong (2015). Comparative Analysis of the Brassica napus Root and Leaf Transcript Profiling in Response to Drought Stress. International Journal of Molecular Sciences.

Luo, Xiang , Ma, Chaozhi , Yue, Yao , Hu, Kaining , Li, Yaya , Duan, Zhiqiang , Wu, Ming , Tu, Jinxing , Shen, Jinxiong , Yi, Bin , Fu, Tingdong (2015). Unravelling the complex trait of harvest index in rapeseed (Brassica napus L.) with association mapping. BMC Genomics.

Dun, Xiaoling , Shen, Wenhao , Hu, Kaining , Zhou, Zhengfu , Xia, Shengqian , Wen, Jing , Yi, Bin , Shen, Jinxiong , Ma, Chaozhi , Tu, Jinxing , Fu, Tingdong , Lagercrantz, Ulf (2014). Neofunctionalization of Duplicated Tic40 Genes Caused a Gain-of-Function Variation Related to Male Fertility in Brassica oleracea Lineages. Plant Physiology.